Scientific Agent Skills

Scientific Writing

Write scientific manuscripts with IMRAD structure, citations, and reporting guidelines for journals

Scientific Visualization

Turn data into publication-ready figures with colorblind-safe palettes and journal formatting

Scientific Critical Thinking

Check research quality find bias and grade evidence like a pro

Scientific Brainstorming

A creative partner for generating novel research ideas through conversation

Literature Review

Search multiple databases, synthesize findings, and generate verified citation documents

Paper Lookup

Search multiple academic databases in one place for papers and preprints

Scientific Schematics

Turn descriptions into publication quality scientific diagrams with smart AI review

Scientific Slides

Create clear, visual scientific presentations for conferences and seminars with ease

Matplotlib

Create beautiful, customizable plots in Python for scientific and publication use

Citation Management

Find papers, check citations, and create perfect BibTeX entries easily

Statistical Analysis

Guided statistical analysis for test selection assumption checks and APA reporting

Peer Review

Evaluate scientific manuscripts and grants with systematic checklist review and feedback

Pdf

Read, merge, split, edit, and fill PDFs with this easy tool

Scikit Learn

Scikit-learn helps you build, evaluate, and tune machine learning models

Markdown Mermaid Writing

Write scientific documents using Markdown and Mermaid diagrams for clarity

Exploratory Data Analysis

Automatically analyze 200+ scientific file formats and generate detailed quality reports

Docx

Create, edit, and manipulate Word documents with ease using this powerful skill

Pptx

Create and edit PowerPoint presentations with built-in design inspiration

Seaborn

Make beautiful statistical charts from your data with just a few lines of code

Database Lookup

Query 78 public databases for reproducible scientific and factual lookups

Markitdown

Turn PDFs, images, audio, and more into clean Markdown with ease

Statsmodels

Run powerful statistical models in Python with detailed diagnostics and inference

Bgpt Paper Search

Search scientific papers and get structured experimental data from full-text studies

Scholar Evaluation

Score and improve research papers with a simple evaluation framework

Hypothesis Generation

Turn observations into testable hypotheses with predictions and experiments guided by the scientific method

Pptx Posters

Design research posters in HTML then export to PPTX or PDF for conferences

Latex Posters

Design conference-ready research posters with LaTeX easily and quickly

Xlsx

Build error-free Excel workbooks with formulas, formatting, and financial modeling

Research Grants

Write winning research proposals for NSF NIH DOE DARPA and Taiwan NSTC

Polars

Fast data manipulation in Python with lazy queries and parallel processing

Generate Image

Generate and edit stunning images with AI using simple commands

Pytorch Lightning

Organize and scale your PyTorch deep learning projects with Lightning tools

Networkx

Create, analyze, and visualize complex networks and graphs in Python

Aeon

Aeon simplifies time series machine learning with ready-to-use tools for forecasting and analysis

Infographics

Create clear infographics with AI quality checks and smart research

Transformers

Use Hugging Face Transformers to load, run, and fine-tune AI models

Paperzilla

Chat with your agent about papers and projects using the Paperzilla CLI

Get Available Resources

Check your system resources and get smart advice for science tasks

Pyzotero

Control your Zotero library with Python. Read, write, and manage references easily

Optimize For Gpu

Speed up Python with NVIDIA GPUs using CuPy and more

Market Research Reports

Generate comprehensive market research reports modeled after top consulting firms

Shap

Understand any machine learning model's predictions with clear SHAP explanations

Dask

Scale your Python data analysis from laptop to cluster with Dask

Sympy

Get exact symbolic math results in Python for algebra calculus and more

Matlab

Use MATLAB or Octave for matrix math, data analysis, and scientific visualizations

Scikit Survival

Analyze time-to-event data with powerful survival models in Python

Parallel Web

Search, extract, enrich, and research with academic sources using one simple tool

Open Notebook

Open-source self-hosted AI research tool for notes, podcasts, and document chat

Pymc

Build Bayesian models with PyMC to quantify uncertainty and make better predictions

Umap Learn

Reduce complex data into clear visuals with fast UMAP embeddings

Torch Geometric

Train graph neural networks for node, link, and graph classification tasks

Hypogenic

Discover patterns in your data with AI-powered hypothesis generation and validation

Scikit Bio

Analyze biological sequences, alignments, and diversity metrics easily with scikit-bio

Venue Templates

Get ready-to-use LaTeX templates for journals, conferences, posters, and grants

Biopython

Work with DNA, RNA, and proteins using Python tools for biology research

Consciousness Council

A council of diverse thinkers helps you explore tough decisions from every angle

What If Oracle

Explore uncertain futures with structured scenario analysis for smarter decisions

Timesfm Forecasting

Forecast any time series instantly without training using Google's TimesFM

Stable Baselines3

Train AI agents with proven reinforcement learning algorithms quickly and easily

Geopandas

Work with geographic data in Python for maps and spatial analysis

Simpy

Simulate queues, resources, and processes with Python's SimPy library

Pymoo

Easily solve multi-objective optimization problems with powerful Python algorithms

Bioservices

Access over forty bioinformatics databases with one consistent Python interface

Clinical Reports

Create clinical reports for case studies, trials, and patient notes with compliance support

Geomaster

Master geospatial science with remote sensing GIS and ML for Earth observation

Anndata

A Python data structure for annotated matrices in single-cell analysis

Gget

Quick bioinformatics lookups from your terminal or Python scripts

Modal

Run Python code and AI models on demand with powerful GPUs in the cloud

Vaex

Process and visualize huge datasets that do not fit in memory

Pufferlib

High-speed reinforcement learning library for parallel training and multi-agent systems

Clinical Decision Support

Generate publication-ready clinical decision support documents for pharmaceutical research and drug development

Deeptools

Turn sequencing data into clear quality checks and publication-ready heatmaps

Benchling Integration

Automate Benchling lab data with Python SDK and REST API integration for life sciences

Pyhealth

Build healthcare AI models easily with PyHealth's simple pipeline

Scanpy

Analyze single cell RNA-seq data with QC clustering and visualization

Adaptyv

Use the Adaptyv Bio Foundry API to design, submit, and retrieve protein experiment results.

Torchdrug

TorchDrug builds graph neural networks for drug discovery and protein modeling

Datamol

Simplify drug discovery with Pythonic molecular chemistry using datamol and RDKit

Deepchem

Use DeepChem to quickly predict molecular properties with diverse featurizers

Rdkit

Analyze molecules with RDKit for drug discovery and chemical research

Fluidsim

Simulate fluid dynamics quickly using Python and high performance computing tools

Imaging Data Commons

Query and download public cancer imaging data for AI training and research

Pydeseq2

Find genes that change between conditions using PyDESeq2 in Python

Astropy

Astropy for astronomy data analysis coordinates units FITS cosmology time

Esm

Generate, predict, and design proteins with ESM language models from EvolutionaryScale

Zarr Python

Store and process massive scientific arrays in the cloud with Zarr

Molecular Dynamics

Run molecular dynamics simulations with OpenMM and MDAnalysis for biophysics and drug binding

Cellxgene Census

Query massive single-cell datasets by tissue cell type or disease with Python

Pydicom

Easily work with DICOM medical images in Python using the pydicom library

Scvi Tools

Deep generative models for single-cell omics analysis and batch correction

Pysam

Read write and analyze genomic files with Python for bioinformatics pipelines

Neurokit2

Analyze ECG, EEG, EDA, and more physiological signals with NeuroKit2

Depmap

Query the Cancer Dependency Map for gene dependency and drug sensitivity data

Dhdna Profiler

Reveal the unique thinking fingerprint hidden in any text

Arboreto

Find gene regulatory networks from expression data using fast scalable algorithms

Pathml

Analyze medical tissue images with machine learning and spatial analysis tools for research

Pymatgen

Explore and analyze crystal structures phase diagrams and materials data

Scvelo

Predict cell fate and developmental trajectories with RNA velocity analysis from single-cell data

Geniml

Turn genomic intervals into machine learning models for discovery and analysis

Polars Bio

Fast genomic interval operations and bioinformatics file I/O using Polars DataFrames